Protocols and Forms
We're slowly working on making our protocols available. These are protocols we use in our own lab for various proteomics processes. These protocols were dominantly created/refined/written up by Mark Flory and Michelle Hori. If you have questions about these protocols, please do reach out to us.
Cell Isolation (coming soon)
Protein Extraction [PDF]
Tryptic Digestion [PDF]
Fractionation (coming soon)
Phospho-Protein Enrichment (coming soon)
Cell Surface Enrichment (coming soon)
Software
A resource for lowering the barriers for proteomics data interpretation
ImmunoGlobe is a map of the immune intercellular interactome that describes how immune cells and immune system components interact to drive immune responses. By structuring our knowledge of immune interactions into a directional graph, ImmunoGlobe makes it easy to explore the relationships between components of the immune system.
Student Resources
As a non-BMI student or post-doc @ Stanford, it can sometimes be difficult to figure out what classes to take and when to develop your bioinformatics skills. With the generous help of a number of current students (thanks Zina, Hunter, David, Michelle, Melissa...) I tried to develop a suggested guide. This is purely an opinion (mine), and shouldn't be taken as gospel. For a really comprehensive list of relevant courses and electives, I suggest taking a look at these awesome BMI pages here.